Roadmap

Ideas and possible new features

• Focused annotation of supervoxel graph
• Use SegEM for answering biological questions
• Improve usability using feedback from users

Done

• Write an efficent implementation of 3D-CNN for detecting membranes in EM images
• Use marker-based waterbased to segement images based on result from CNN
• Report voxel based-metrics as described in the ISBI challenge on 2D segmentation
• Propose skeleton-based split-merger metric for better biological interpretability
• Make skeleton-based volume reconstruction useable for intracellular stained data
• Write methods to automatically detect contacts between cell pairs and inspect them in

  webKNOSSOS